Variant report

Variant	rs12963221
Chromosome Location	chr18:43987935-43987936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12606026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12607970	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12608433	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12956369	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12965332	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16978558	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16978559	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34046291	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34139708	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34271155	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34311565	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34472213	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34656919	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34960770	0.87[EUR][1000 genomes]
rs35025356	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35044751	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35897092	0.86[ASN][1000 genomes]
rs35939778	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36020946	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3850527	0.82[EUR][1000 genomes]
rs3889942	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57027858	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58223751	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58843633	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9635947	0.90[ASN][1000 genomes]
rs9949033	0.80[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:43981800-43990200	Weak transcription	Lung	lung
4	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:43983000-43989600	Weak transcription	Fetal Lung	lung
6	chr18:43983200-43988200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:43983200-43991200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
9	chr18:43985200-43988400	Enhancers	Fetal Muscle Trunk	muscle
10	chr18:43985200-43988600	Enhancers	Right Atrium	heart
11	chr18:43985200-43989800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
13	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
14	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
15	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr18:43985800-43991800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr18:43986000-43988400	Enhancers	Psoas Muscle	Psoas
18	chr18:43986400-43989400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr18:43986600-43988200	Enhancers	Colon Smooth Muscle	Colon
20	chr18:43986600-43988200	Enhancers	Rectal Smooth Muscle	rectum
21	chr18:43986800-43990200	Weak transcription	Spleen	Spleen
22	chr18:43986800-43991800	Weak transcription	Brain Angular Gyrus	brain
23	chr18:43987000-43988800	Enhancers	HSMMtube	muscle
24	chr18:43987200-43988000	Enhancers	NHEK	skin
25	chr18:43987200-43988400	Enhancers	NH-A	brain
26	chr18:43987200-43988800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr18:43987400-43988200	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr18:43987400-43988800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr18:43987400-43990800	Weak transcription	Brain Anterior Caudate	brain
30	chr18:43987400-43991800	Weak transcription	Ovary	ovary
31	chr18:43987600-43988000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:43987600-43988600	Genic enhancers	Fetal Stomach	stomach
33	chr18:43987800-43988000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr18:43987800-43988200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr18:43987800-43988600	Enhancers	Esophagus	oesophagus
36	chr18:43987800-43988800	Enhancers	GM12878-XiMat	blood
37	chr18:43987800-43992000	Enhancers	Stomach Smooth Muscle	stomach

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