Variant report

Variant	rs34656919
Chromosome Location	chr18:43982583-43982584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43981917..43984385-chr18:43994291..43996366,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12606026	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12607970	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12608433	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12956369	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12963221	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12965332	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16978558	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16978559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34046291	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34139708	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34271155	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34311565	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34472213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34960770	0.89[EUR][1000 genomes]
rs35025356	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35044751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35897092	0.83[ASN][1000 genomes]
rs35939778	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020946	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3889942	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57027858	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58223751	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58843633	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9635947	0.87[ASN][1000 genomes]
rs9949033	0.80[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
2	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:43975200-43983400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:43977000-43983200	Enhancers	Fetal Muscle Leg	muscle
6	chr18:43977200-43983000	Weak transcription	Psoas Muscle	Psoas
7	chr18:43978200-43982800	Weak transcription	Fetal Lung	lung
8	chr18:43978400-43982800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
10	chr18:43978800-43982600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:43978800-43982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
13	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr18:43980600-43985200	Weak transcription	Left Ventricle	heart
16	chr18:43980600-43985200	Weak transcription	Right Ventricle	heart
17	chr18:43980800-43982600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr18:43980800-43985000	Weak transcription	Fetal Heart	heart
19	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
20	chr18:43981600-43982800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr18:43981800-43990200	Weak transcription	Lung	lung
22	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
24	chr18:43982400-43982800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links