Variant report

Variant	rs12607419
Chromosome Location	chr18:44002268-44002269
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12604983	0.81[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs12606026	0.87[CEU][hapmap]
rs12607113	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12607460	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12607488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12607970	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs12608433	0.86[CEU][hapmap]
rs12956271	0.94[CEU][hapmap]
rs12965332	0.88[CEU][hapmap];0.85[MEX][hapmap]
rs12968635	1.00[JPT][hapmap]
rs16978558	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs16978559	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs2053957	0.85[ASN][1000 genomes]
rs2886344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34223668	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34229367	0.83[EUR][1000 genomes]
rs34543105	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35178576	0.83[EUR][1000 genomes]
rs35308870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35897092	0.81[EUR][1000 genomes]
rs3850527	0.84[EUR][1000 genomes]
rs3861807	0.84[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs3861808	0.83[EUR][1000 genomes]
rs3889942	0.94[CEU][hapmap]
rs3911129	0.83[EUR][1000 genomes]
rs4890650	0.83[EUR][1000 genomes]
rs4890651	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56126321	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56267717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60703536	0.86[ASN][1000 genomes]
rs71364535	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71364536	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229614	0.82[CEU][hapmap]
rs7235217	0.85[TSI][hapmap]
rs7236110	0.94[CEU][hapmap]
rs8085058	0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9635947	0.81[EUR][1000 genomes]
rs9949033	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs9949861	0.94[CEU][hapmap]
rs9962451	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
2	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
3	chr18:43995800-44011600	Weak transcription	Thymus	Thymus
4	chr18:43998200-44005200	Enhancers	Fetal Muscle Leg	muscle
5	chr18:43999000-44002400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:43999000-44011600	Weak transcription	Fetal Lung	lung
7	chr18:43999400-44005600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr18:43999400-44013000	Weak transcription	Brain Germinal Matrix	brain
9	chr18:43999600-44004400	Weak transcription	Fetal Stomach	stomach
10	chr18:43999800-44002400	Weak transcription	Esophagus	oesophagus
11	chr18:43999800-44004200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:43999800-44004200	Weak transcription	Right Ventricle	heart
13	chr18:43999800-44004800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr18:43999800-44005400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:43999800-44005600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr18:43999800-44030200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:44000000-44004000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:44000000-44004200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr18:44000000-44004200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr18:44000000-44005400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr18:44000200-44004000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr18:44000200-44004200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr18:44000200-44004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr18:44000200-44004600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr18:44000200-44014600	Weak transcription	Right Atrium	heart
26	chr18:44000400-44002400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr18:44000400-44004200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr18:44000400-44004600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr18:44000400-44004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr18:44001000-44003800	Enhancers	Psoas Muscle	Psoas
31	chr18:44001000-44007800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr18:44001200-44005400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr18:44001400-44002600	Enhancers	Adipose Nuclei	Adipose
34	chr18:44001400-44003600	Enhancers	Liver	Liver
35	chr18:44001600-44002600	Enhancers	Small Intestine	intestine
36	chr18:44001600-44002800	Enhancers	Fetal Thymus	thymus
37	chr18:44001600-44003600	Enhancers	Left Ventricle	heart
38	chr18:44001800-44002400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr18:44001800-44002600	Enhancers	GM12878-XiMat	blood
40	chr18:44001800-44003600	Enhancers	Spleen	Spleen
41	chr18:44002000-44002600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr18:44002000-44003600	Enhancers	K562	blood
43	chr18:44002200-44002600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr18:44002200-44003400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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