Variant report

Variant	rs4890651
Chromosome Location	chr18:43999264-43999265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43998677..44000273-chr18:44009943..44011695,2	K562	blood:
2	chr18:43997593..44000218-chr18:44002341..44004552,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12604983	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12607113	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12607419	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12607488	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34223668	0.83[EUR][1000 genomes]
rs34229367	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35178576	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35308870	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs36071668	0.86[EUR][1000 genomes]
rs3861807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3911129	0.83[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4890326	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4890649	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs4890650	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56126321	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56267717	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71364535	0.82[EUR][1000 genomes]
rs71364536	0.83[EUR][1000 genomes]
rs7235217	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9962451	0.80[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4890651	RNF165	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:43992600-44001600	Weak transcription	Fetal Thymus	thymus
3	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
4	chr18:43994800-44015400	Weak transcription	Fetal Brain Male	brain
5	chr18:43995800-44011600	Weak transcription	Thymus	Thymus
6	chr18:43998000-43999800	Enhancers	Psoas Muscle	Psoas
7	chr18:43998200-43999800	Enhancers	Right Ventricle	heart
8	chr18:43998200-44005200	Enhancers	Fetal Muscle Leg	muscle
9	chr18:43998400-43999600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr18:43998400-43999600	Enhancers	Rectal Smooth Muscle	rectum
11	chr18:43998400-43999600	Enhancers	HMEC	breast
12	chr18:43998400-43999600	Enhancers	NHEK	skin
13	chr18:43998400-43999800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr18:43998400-43999800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr18:43998400-43999800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr18:43998400-43999800	Enhancers	Colon Smooth Muscle	Colon
17	chr18:43998400-44000000	Enhancers	Dnd41	blood
18	chr18:43998400-44000400	Enhancers	Fetal Heart	heart
19	chr18:43998600-43999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr18:43998600-43999400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr18:43998600-43999400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr18:43998600-43999800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:43998600-43999800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr18:43998600-43999800	Enhancers	Adipose Nuclei	Adipose
25	chr18:43998600-43999800	Enhancers	GM12878-XiMat	blood
26	chr18:43998600-44000000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr18:43998600-44000200	Enhancers	K562	blood
28	chr18:43998600-44000400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr18:43998600-44000400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr18:43998800-43999400	Enhancers	Primary hematopoietic stem cells	blood
31	chr18:43998800-43999600	Enhancers	Fetal Stomach	stomach
32	chr18:43998800-44000000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr18:43998800-44000000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr18:43998800-44000200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr18:43998800-44000200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr18:43998800-44000400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr18:43998800-44000400	Enhancers	H9 Cell Line	embryonic stem cell
38	chr18:43998800-44000400	Enhancers	Liver	Liver
39	chr18:43998800-44000600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr18:43998800-44001600	Weak transcription	Small Intestine	intestine
41	chr18:43999000-43999400	Enhancers	Brain Germinal Matrix	brain
42	chr18:43999000-43999400	Enhancers	Lung	lung
43	chr18:43999000-43999800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr18:43999000-43999800	Enhancers	Esophagus	oesophagus
45	chr18:43999000-43999800	Enhancers	Stomach Smooth Muscle	stomach
46	chr18:43999000-44000000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:43999000-44000000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr18:43999000-44000200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr18:43999000-44000200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr18:43999000-44000200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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