Variant report

Variant	rs35178576
Chromosome Location	chr18:43995080-43995081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43981917..43984385-chr18:43994291..43996366,2	K562	blood:
2	chr18:43932218..43934486-chr18:43993141..43996050,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12604983	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12607113	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12607419	0.83[EUR][1000 genomes]
rs12607488	0.83[EUR][1000 genomes]
rs34223668	0.83[EUR][1000 genomes]
rs34229367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35308870	0.83[EUR][1000 genomes]
rs36071668	0.86[EUR][1000 genomes]
rs3861807	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861808	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3911129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4890326	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4890649	0.85[EUR][1000 genomes]
rs4890650	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4890651	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126321	0.83[EUR][1000 genomes]
rs56267717	0.83[EUR][1000 genomes]
rs71364535	0.82[EUR][1000 genomes]
rs71364536	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7235217	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35178576	RNF165	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43985000-43995200	Enhancers	Fetal Heart	heart
2	chr18:43985200-43997000	Enhancers	Fetal Muscle Leg	muscle
3	chr18:43985200-43997400	Enhancers	Left Ventricle	heart
4	chr18:43985200-43997800	Enhancers	Right Ventricle	heart
5	chr18:43985200-44000600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr18:43988800-43996400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:43989800-43999000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr18:43990200-43995200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr18:43990800-43995200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:43990800-43996000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:43991000-43996800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:43991000-43997000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr18:43991200-43995200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr18:43991200-43996200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr18:43991200-43997000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr18:43991200-43997200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr18:43991400-43996000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:43991400-43996200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr18:43991800-43995200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:43992600-43995400	Enhancers	Psoas Muscle	Psoas
21	chr18:43992600-44001600	Weak transcription	Fetal Thymus	thymus
22	chr18:43992800-43998400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:43993000-43996400	Weak transcription	Colonic Mucosa	Colon
24	chr18:43993000-43998400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:43993200-43998400	Weak transcription	HMEC	breast
26	chr18:43993400-43996000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr18:43993400-43997000	Weak transcription	Dnd41	blood
28	chr18:43993400-43998400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr18:43993400-43998600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr18:43993600-43995200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr18:43993600-43997600	Weak transcription	Ovary	ovary
32	chr18:43993600-43998200	Weak transcription	Liver	Liver
33	chr18:43993600-43999000	Weak transcription	Brain Angular Gyrus	brain
34	chr18:43993800-43995200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr18:43994000-43996800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr18:43994000-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr18:43994200-43998400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr18:43994200-43998400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr18:43994200-43998400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr18:43994200-43999000	Weak transcription	Brain Germinal Matrix	brain
41	chr18:43994200-44011600	Weak transcription	Fetal Brain Female	brain
42	chr18:43994400-43995200	Enhancers	Right Atrium	heart
43	chr18:43994400-43996600	Enhancers	Adipose Nuclei	Adipose
44	chr18:43994400-43998400	Weak transcription	Colon Smooth Muscle	Colon
45	chr18:43994600-43995200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr18:43994600-43995200	Enhancers	Fetal Stomach	stomach
47	chr18:43994800-43995200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr18:43994800-43996400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr18:43994800-43996600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr18:43994800-43998800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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