Variant report

Variant	rs34543105
Chromosome Location	chr18:43982472-43982473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43981917..43984385-chr18:43994291..43996366,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12607419	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12607460	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12607488	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12956271	0.88[ASN][1000 genomes]
rs12968635	0.82[ASN][1000 genomes]
rs2053957	0.92[ASN][1000 genomes]
rs2886344	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34223668	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35308870	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35897092	0.88[EUR][1000 genomes]
rs36071668	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4890649	0.82[AFR][1000 genomes]
rs56126321	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56267717	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60703536	0.96[ASN][1000 genomes]
rs71364535	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71364536	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7235217	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7236110	0.81[EUR][1000 genomes]
rs8085058	0.94[ASN][1000 genomes]
rs9635947	0.88[EUR][1000 genomes]
rs9949861	0.81[EUR][1000 genomes]
rs9962451	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
2	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:43975200-43983400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:43977000-43983200	Enhancers	Fetal Muscle Leg	muscle
6	chr18:43977200-43983000	Weak transcription	Psoas Muscle	Psoas
7	chr18:43978200-43982800	Weak transcription	Fetal Lung	lung
8	chr18:43978400-43982800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:43978600-43985200	Weak transcription	Esophagus	oesophagus
10	chr18:43978800-43982600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:43978800-43982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr18:43978800-43986200	Weak transcription	Fetal Stomach	stomach
13	chr18:43979800-43986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr18:43980200-43985400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr18:43980600-43985200	Weak transcription	Left Ventricle	heart
16	chr18:43980600-43985200	Weak transcription	Right Ventricle	heart
17	chr18:43980800-43982600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr18:43980800-43985000	Weak transcription	Fetal Heart	heart
19	chr18:43981200-43987800	Weak transcription	GM12878-XiMat	blood
20	chr18:43981600-43982800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr18:43981800-43990200	Weak transcription	Lung	lung
22	chr18:43981800-43991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:43982000-43986600	Weak transcription	Colon Smooth Muscle	Colon
24	chr18:43982400-43982800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links