Variant report

Variant	rs4894921
Chromosome Location	chr3:105070826-105070827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10049426	0.86[CHB][hapmap]
rs1036582	0.86[CHB][hapmap];0.87[GIH][hapmap]
rs1036583	1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.83[TSI][hapmap];0.89[ASN][1000 genomes]
rs10511243	1.00[CHB][hapmap]
rs10933817	0.86[CHB][hapmap]
rs12152354	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12488994	0.86[CHB][hapmap]
rs12494392	1.00[CHB][hapmap]
rs13100098	0.86[CHB][hapmap]
rs1438538	0.86[CHB][hapmap]
rs1438545	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1898654	1.00[CHB][hapmap]
rs2164956	0.86[CHB][hapmap]
rs2178407	0.88[CHB][hapmap]
rs2196745	1.00[CHB][hapmap]
rs4894831	0.86[CHB][hapmap]
rs62262077	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6437587	1.00[CHB][hapmap]
rs6437589	1.00[CHB][hapmap]
rs6764212	0.95[LWK][hapmap]
rs6767277	0.86[CHB][hapmap]
rs6769302	0.86[CHB][hapmap];0.87[GIH][hapmap]
rs6779807	0.86[CHB][hapmap]
rs6806304	1.00[CHB][hapmap]
rs7431531	0.86[CHB][hapmap];0.81[GIH][hapmap];0.90[LWK][hapmap]
rs7615005	0.86[CHB][hapmap]
rs7621905	0.90[LWK][hapmap]
rs7629589	0.86[CHB][hapmap]
rs7633149	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7644273	0.86[CHB][hapmap];0.90[GIH][hapmap]
rs7647011	0.86[CHB][hapmap]
rs7649033	0.86[CHB][hapmap]
rs9851952	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105068000-105072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:105068000-105072400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:105068000-105072400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:105068600-105071400	Enhancers	NHDF-Ad	bronchial
5	chr3:105068600-105072400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:105068600-105072400	Enhancers	NHEK	skin
7	chr3:105068600-105074600	Enhancers	HMEC	breast
8	chr3:105069000-105072400	Weak transcription	HSMMtube	muscle
9	chr3:105069400-105071400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:105069800-105072200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:105069800-105072400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:105069800-105072400	Weak transcription	Psoas Muscle	Psoas
13	chr3:105070000-105071000	Enhancers	NHLF	lung
14	chr3:105070000-105071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:105070000-105071400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr3:105070000-105072200	Enhancers	HUVEC	blood vessel
17	chr3:105070200-105071600	Weak transcription	NH-A	brain
18	chr3:105070200-105072400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:105070200-105072400	Weak transcription	Aorta	Aorta
20	chr3:105070400-105071000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:105070400-105071400	Weak transcription	HSMM	muscle
22	chr3:105070400-105071800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:105070600-105071000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:105070600-105071000	Enhancers	A549	lung
25	chr3:105070800-105072000	Weak transcription	Osteobl	bone

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