Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10049426	0.86[CHB][hapmap]
rs1036582	0.86[CHB][hapmap]
rs1036583	1.00[CHB][hapmap]
rs10511243	1.00[CHB][hapmap]
rs10933817	0.86[CHB][hapmap]
rs12488994	0.86[CHB][hapmap]
rs12494392	1.00[CHB][hapmap]
rs13100098	0.86[CHB][hapmap]
rs1438538	0.86[CHB][hapmap]
rs1438545	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1898654	1.00[CHB][hapmap]
rs2164956	0.86[CHB][hapmap]
rs2178407	0.88[CHB][hapmap]
rs2196745	1.00[CHB][hapmap]
rs4894831	0.86[CHB][hapmap]
rs4894921	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62262077	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6437587	1.00[CHB][hapmap]
rs6437589	1.00[CHB][hapmap]
rs6764212	0.83[YRI][hapmap]
rs6767277	0.86[CHB][hapmap]
rs6769302	0.86[CHB][hapmap]
rs6778460	0.84[YRI][hapmap]
rs6779807	0.86[CHB][hapmap]
rs6804574	0.83[YRI][hapmap]
rs6806304	1.00[CHB][hapmap]
rs73175237	0.83[AFR][1000 genomes]
rs7431531	0.86[CHB][hapmap]
rs7615005	0.86[CHB][hapmap]
rs7621905	0.83[YRI][hapmap]
rs7629589	0.86[CHB][hapmap]
rs7633149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644273	0.86[CHB][hapmap]
rs7647011	0.86[CHB][hapmap]
rs7649033	0.86[CHB][hapmap]
rs9851952	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007243	chr3:104833483-105063375	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105042200-105045400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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