Variant report

Variant	rs4896698
Chromosome Location	chr6:144426111-144426112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144408749..144411162-chr6:144425038..144426692,2	K562	blood:
2	chr6:144425724..144426721-chr6:144536343..144537862,6	MCF-7	breast:
3	chr6:144425745..144426690-chr6:144803179..144803721,3	MCF-7	breast:
4	chr6:144424238..144426427-chr6:144430404..144432421,2	K562	blood:
5	chr6:144425599..144426717-chr6:144540007..144540848,4	MCF-7	breast:
6	chr6:144426096..144427058-chr6:144537841..144538471,2	MCF-7	breast:
7	chr6:144425974..144426502-chr6:144539958..144540611,2	MCF-7	breast:
8	chr6:144426064..144426738-chr6:144537290..144537826,2	MCF-7	breast:
9	chr6:144425802..144426547-chr6:144540161..144540694,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11155344	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2179409	0.87[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6570604	0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570605	0.81[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7747271	0.91[ASW][hapmap];0.85[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772820	0.80[GIH][hapmap]
rs9321960	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144417800-144432600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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