Variant report

Variant	rs7772820
Chromosome Location	chr6:144381669-144381670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155340	0.81[ASN][1000 genomes]
rs12207102	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328542	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4896693	0.95[ASN][1000 genomes]
rs6570602	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs6901529	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6929575	0.81[ASN][1000 genomes]
rs7743691	0.88[ASN][1000 genomes]
rs7747271	0.81[ASW][hapmap]
rs7752112	0.83[EUR][1000 genomes]
rs7752303	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs9321957	0.94[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs9321958	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321960	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs9321961	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs9496860	0.87[CEU][hapmap];0.89[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7772820	PLAGL1	cis	multi-tissue	Pritchard

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:144375800-144384600	Weak transcription	Gastric	stomach
3	chr6:144376800-144384200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:144377000-144384000	Weak transcription	Primary B cells from cord blood	blood
5	chr6:144377200-144383800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:144377200-144383800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:144377200-144383800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:144377400-144383800	Weak transcription	Thymus	Thymus
9	chr6:144377600-144384000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:144377600-144384200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144378200-144382400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:144378200-144384000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:144381000-144383600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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