Variant report

Variant	rs11155340
Chromosome Location	chr6:144344161-144344162
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144342771..144345121-chr6:144347638..144350267,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12175856	1.00[YRI][hapmap]
rs12207102	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1983773	1.00[YRI][hapmap]
rs2064660	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2328537	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs2328542	0.94[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2328564	1.00[YRI][hapmap]
rs4896693	0.84[ASN][1000 genomes]
rs6570602	0.84[CHB][hapmap]
rs6901529	0.88[ASN][1000 genomes]
rs6929575	0.95[ASN][1000 genomes]
rs7743691	0.91[ASN][1000 genomes]
rs7752303	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs7772820	0.94[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9321957	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9321958	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9321960	0.83[CHB][hapmap]
rs9321961	0.84[CHB][hapmap]
rs9386055	0.92[ASN][1000 genomes]
rs9390157	1.00[YRI][hapmap]
rs9496839	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496860	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144341600-144345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:144341800-144347400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:144343400-144355600	Weak transcription	Primary hematopoietic stem cells	blood

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