Variant report

Variant	rs9321960
Chromosome Location	chr6:144415443-144415444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143830407..143832978-chr6:144413956..144415714,2	K562	blood:
2	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
3	chr6:144414215..144416666-chr6:144469400..144471689,2	K562	blood:
4	chr6:143831478..143833047-chr6:144412964..144415456,2	K562	blood:
5	chr6:144385365..144387427-chr6:144414776..144416724,2	MCF-7	breast:
6	chr6:144355070..144357503-chr6:144413513..144415682,2	K562	blood:
7	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
8	chr6:144411393..144413934-chr6:144414975..144416479,2	MCF-7	breast:
9	chr6:143769046..143771743-chr6:144414666..144417027,2	K562	blood:
10	chr6:143998944..144000506-chr6:144415343..144418005,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000135604	Chromatin interaction
ENSG00000112419	Chromatin interaction
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12207102	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs2328542	0.85[CHB][hapmap];0.83[GIH][hapmap]
rs2328543	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4895629	0.81[ASN][1000 genomes]
rs4896694	0.85[ASN][1000 genomes]
rs6570602	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570605	0.80[GIH][hapmap]
rs6912191	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747271	0.81[ASW][hapmap];0.80[GIH][hapmap]
rs7752112	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752303	0.81[CHB][hapmap]
rs7772820	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs9321957	0.81[CHB][hapmap]
rs9321961	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496860	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9321960	ADAT2	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144405000-144415600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:144406000-144416000	Weak transcription	Aorta	Aorta
3	chr6:144414000-144415600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:144414200-144415600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:144414400-144415600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:144414600-144415600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:144414600-144415800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:144414600-144415800	Enhancers	Spleen	Spleen
9	chr6:144414600-144416200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:144414800-144415600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr6:144414800-144415600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:144414800-144415600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:144414800-144415600	Enhancers	Brain Hippocampus Middle	brain
14	chr6:144414800-144415600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:144414800-144415600	Enhancers	Ovary	ovary
16	chr6:144414800-144415600	Enhancers	Right Atrium	heart
17	chr6:144414800-144415600	Flanking Active TSS	HepG2	liver
18	chr6:144414800-144415800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:144414800-144415800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:144414800-144415800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:144414800-144415800	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:144414800-144415800	Enhancers	Small Intestine	intestine
23	chr6:144414800-144416000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:144414800-144416000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:144414800-144416000	Flanking Active TSS	Fetal Brain Male	brain
26	chr6:144414800-144416200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr6:144414800-144416200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:144414800-144416200	Flanking Active TSS	Liver	Liver
29	chr6:144414800-144418000	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:144415000-144415600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:144415000-144415600	Enhancers	Fetal Muscle Leg	muscle
32	chr6:144415000-144415800	Enhancers	Esophagus	oesophagus
33	chr6:144415000-144415800	Enhancers	Stomach Mucosa	stomach
34	chr6:144415000-144415800	Flanking Active TSS	HSMM	muscle
35	chr6:144415000-144416000	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr6:144415000-144416200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:144415000-144416200	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr6:144415000-144416400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:144415000-144416600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:144415000-144416600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr6:144415000-144416800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr6:144415000-144417600	Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr6:144415200-144415600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
44	chr6:144415200-144415600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:144415200-144415600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:144415200-144415600	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:144415200-144415600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:144415200-144415600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:144415200-144415600	Flanking Active TSS	Fetal Kidney	kidney
50	chr6:144415200-144415600	Flanking Active TSS	Psoas Muscle	Psoas

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