Variant report

Variant	rs7752112
Chromosome Location	chr6:144405771-144405772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2328543	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4895629	0.81[ASN][1000 genomes]
rs4896694	0.85[ASN][1000 genomes]
rs6570602	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912191	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772820	0.83[EUR][1000 genomes]
rs9321960	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321961	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9496860	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144396600-144414800	Weak transcription	Gastric	stomach
3	chr6:144399400-144413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
5	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:144399800-144414800	Weak transcription	Ovary	ovary
7	chr6:144400200-144408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:144403200-144414800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:144404000-144406000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:144404000-144406600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:144404000-144414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:144404200-144408600	Weak transcription	K562	blood
13	chr6:144404200-144414600	Weak transcription	Esophagus	oesophagus
14	chr6:144404200-144414800	Weak transcription	Lung	lung
15	chr6:144404200-144415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:144404200-144415000	Weak transcription	Thymus	Thymus
17	chr6:144404400-144406200	Weak transcription	Fetal Stomach	stomach
18	chr6:144404400-144414000	Weak transcription	Fetal Brain Female	brain
19	chr6:144404600-144414600	Weak transcription	Brain Germinal Matrix	brain
20	chr6:144404600-144414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:144404800-144409200	Weak transcription	GM12878-XiMat	blood
22	chr6:144404800-144414400	Weak transcription	Liver	Liver
23	chr6:144404800-144414800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:144404800-144415200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:144404800-144415200	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:144405000-144414800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:144405000-144414800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:144405000-144415600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:144405200-144408800	Weak transcription	Left Ventricle	heart
30	chr6:144405200-144409000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:144405200-144414600	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:144405200-144414800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:144405400-144406200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:144405400-144414800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:144405400-144415000	Weak transcription	Primary B cells from cord blood	blood
36	chr6:144405400-144415000	Weak transcription	Fetal Kidney	kidney
37	chr6:144405400-144415200	Weak transcription	Placenta	Placenta
38	chr6:144405600-144415200	Weak transcription	Rectal Smooth Muscle	rectum

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