Variant report

Variant	rs7743691
Chromosome Location	chr6:144358607-144358608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11155340	0.91[ASN][1000 genomes]
rs12207102	0.99[ASN][1000 genomes]
rs2064660	0.84[ASN][1000 genomes]
rs2328542	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4896693	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6901529	0.97[ASN][1000 genomes]
rs6929575	0.92[ASN][1000 genomes]
rs7752303	0.85[ASN][1000 genomes]
rs7772820	0.88[ASN][1000 genomes]
rs9321957	0.85[ASN][1000 genomes]
rs9321958	0.99[ASN][1000 genomes]
rs9386055	0.85[ASN][1000 genomes]
rs9496839	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144355600-144359800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:144358000-144361800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:144358200-144359200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:144358200-144359400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:144358400-144358800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:144358400-144359200	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:144358400-144359400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:144358400-144359400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:144358600-144359200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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