Variant report

Variant	rs6901529
Chromosome Location	chr6:144375655-144375656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144375075..144378072-chr6:144379942..144382591,2	MCF-7	breast:
2	chr6:144370110..144372137-chr6:144374360..144376515,2	K562	blood:
3	chr6:144373653..144378437-chr6:144382372..144387583,6	MCF-7	breast:
4	chr6:144370110..144373027-chr6:144375015..144377542,2	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11155340	0.88[ASN][1000 genomes]
rs12207102	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2064660	0.81[ASN][1000 genomes]
rs2328542	0.94[ASN][1000 genomes]
rs4896693	0.96[ASN][1000 genomes]
rs6929575	0.89[ASN][1000 genomes]
rs7743691	0.97[ASN][1000 genomes]
rs7752303	0.82[ASN][1000 genomes]
rs7772820	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321957	0.82[ASN][1000 genomes]
rs9321958	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386055	0.82[ASN][1000 genomes]
rs9496839	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144370200-144375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:144371200-144376200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:144373600-144375800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:144373800-144376000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:144374400-144376000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:144374600-144375800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:144374600-144376000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:144374600-144376000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:144374600-144376000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:144374600-144376400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:144374800-144376000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:144375000-144376000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr6:144375000-144376200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:144375600-144375800	Enhancers	Primary B cells from cord blood	blood
15	chr6:144375600-144375800	Enhancers	Gastric	stomach
16	chr6:144375600-144375800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:144375600-144376000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:144375600-144376000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:144375600-144376000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:144375600-144376200	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:144375600-144376200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:144375600-144376200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:144375600-144376400	Active TSS	GM12878-XiMat	blood

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