Variant report

Variant	rs4896706
Chromosome Location	chr6:144519150-144519151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10872568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155349	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12664476	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146170	0.98[ASN][1000 genomes]
rs3822904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4286803	0.86[GIH][hapmap]
rs4895635	0.84[GIH][hapmap]
rs61371300	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62428913	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904683	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7747712	0.91[EUR][1000 genomes]
rs9321966	0.88[EUR][1000 genomes]
rs941937	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4896706	GPR126	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:144508800-144520000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:144509000-144520000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:144509000-144520000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:144509200-144519200	Weak transcription	Spleen	Spleen
7	chr6:144509400-144520200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:144509800-144519400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:144516200-144522000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:144517200-144519400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:144517400-144523400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:144518200-144520000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:144518800-144520600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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