Variant report

Variant	rs7747712
Chromosome Location	chr6:144517647-144517648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10872568	0.91[EUR][1000 genomes]
rs11155349	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2146170	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3822904	0.91[EUR][1000 genomes]
rs4286803	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4446579	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895635	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4896706	0.91[EUR][1000 genomes]
rs62428913	0.89[EUR][1000 genomes]
rs6570611	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903349	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903726	0.91[EUR][1000 genomes]
rs7751614	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321966	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs941937	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:144508800-144520000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144509000-144520000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:144509000-144520000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144509200-144519200	Weak transcription	Spleen	Spleen
8	chr6:144509400-144520200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:144509800-144519400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:144512000-144518200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:144516200-144522000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:144517200-144519400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:144517400-144523400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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