Variant report

Variant	rs4895635
Chromosome Location	chr6:144535974-144535975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144525272..144527107-chr6:144534912..144538117,3	K562	blood:
2	chr6:144521511..144524217-chr6:144535880..144537916,2	MCF-7	breast:
3	chr6:144471017..144473843-chr6:144535410..144538826,5	MCF-7	breast:
4	chr6:144470263..144473848-chr6:144535893..144539844,4	MCF-7	breast:
5	chr6:144533301..144535382-chr6:144535722..144537282,2	MCF-7	breast:
6	chr6:144415145..144417746-chr6:144535932..144539516,6	K562	blood:
7	chr6:144413850..144419094-chr6:144535932..144540083,10	K562	blood:
8	chr6:144533845..144538610-chr6:144604054..144608164,4	MCF-7	breast:
9	chr6:144528833..144531316-chr6:144534219..144536823,2	MCF-7	breast:
10	chr6:144476586..144479088-chr6:144535900..144538153,2	MCF-7	breast:
11	chr6:144525386..144527700-chr6:144534912..144536588,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000217027	Chromatin interaction
ENSG00000169976	Chromatin interaction
ENSG00000135604	Chromatin interaction
ENSG00000152818	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10872568	0.86[GIH][hapmap]
rs12661628	0.83[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12664476	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1535476	0.82[ASN][1000 genomes]
rs2146170	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3822904	0.86[GIH][hapmap]
rs4286803	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4446579	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4895636	0.86[ASN][1000 genomes]
rs4896707	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61371300	0.87[EUR][1000 genomes]
rs6570611	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6570613	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570614	0.84[ASN][1000 genomes]
rs6903349	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6904683	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs6930813	0.83[CEU][hapmap]
rs6941329	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747712	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7751614	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9321966	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9376812	0.83[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4895635	GPR126	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144530400-144536200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144533600-144536200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:144534400-144536200	Weak transcription	Lung	lung
4	chr6:144534600-144536400	Weak transcription	Fetal Brain Female	brain
5	chr6:144535000-144536400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:144535600-144536400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:144535600-144536800	Enhancers	Primary monocytes fromperipheralblood	blood

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