Variant report

Variant	rs6570614
Chromosome Location	chr6:144544173-144544174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
2	chr6:144537384..144538997-chr6:144543349..144545214,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1124956	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661628	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1322450	0.91[EUR][1000 genomes]
rs1322451	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1535476	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1547622	0.93[EUR][1000 genomes]
rs1985845	0.92[EUR][1000 genomes]
rs4895635	0.84[ASN][1000 genomes]
rs4895636	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896707	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896708	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6570613	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570618	0.81[ASN][1000 genomes]
rs6930813	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6941329	0.85[ASN][1000 genomes]
rs7738503	0.86[ASN][1000 genomes]
rs7741762	0.81[EUR][1000 genomes]
rs7750035	0.88[ASN][1000 genomes]
rs7763017	0.91[EUR][1000 genomes]
rs7766690	0.89[ASN][1000 genomes]
rs7767952	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7770125	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9376812	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376814	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386062	0.87[ASN][1000 genomes]
rs9390159	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399474	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403554	0.82[EUR][1000 genomes]
rs9403555	0.82[EUR][1000 genomes]
rs9403556	0.81[EUR][1000 genomes]
rs9403557	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144538800-144544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:144538800-144544800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:144541400-144544200	Weak transcription	HSMM	muscle
6	chr6:144541600-144544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:144541600-144544400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:144541800-144544400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:144542000-144549600	Weak transcription	HSMMtube	muscle
10	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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