Variant report

Variant	rs1124956
Chromosome Location	chr6:144554828-144554829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144548086..144549908-chr6:144553718..144555836,2	MCF-7	breast:
2	chr6:144546836..144549581-chr6:144552888..144555607,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12661628	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664476	0.80[CEU][hapmap]
rs1322450	0.83[EUR][1000 genomes]
rs1322451	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1535476	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1547622	0.82[EUR][1000 genomes]
rs1985845	0.82[EUR][1000 genomes]
rs4895635	1.00[CHB][hapmap]
rs4895636	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896707	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896708	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6570613	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570614	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570618	1.00[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6904683	0.81[CEU][hapmap]
rs6930813	0.96[CEU][hapmap]
rs6941329	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7738503	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7750035	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7751614	0.81[CEU][hapmap]
rs7763017	0.83[EUR][1000 genomes]
rs7766690	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770125	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386062	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390159	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399474	0.98[ASN][1000 genomes]
rs9403554	0.92[EUR][1000 genomes]
rs9403555	0.92[EUR][1000 genomes]
rs9403558	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144552600-144555600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:144553400-144556000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:144553600-144555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:144553600-144555800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:144553600-144560800	Weak transcription	Right Atrium	heart
7	chr6:144553800-144555000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:144553800-144556200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:144554000-144556400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:144554800-144555200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:144554800-144555400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:144554800-144555400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:144554800-144555800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:144554800-144556600	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links