Variant report

Variant	rs1535476
Chromosome Location	chr6:144549683-144549684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144540350..144543200-chr6:144548789..144551846,3	MCF-7	breast:
2	chr6:144548086..144549908-chr6:144553718..144555836,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1124956	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664476	0.80[CEU][hapmap]
rs1322450	0.82[EUR][1000 genomes]
rs1322451	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547622	0.83[EUR][1000 genomes]
rs1985845	0.83[EUR][1000 genomes]
rs4895635	0.87[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4895636	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896707	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896708	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6570613	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570614	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570618	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6904683	0.81[CEU][hapmap]
rs6930813	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6941329	0.87[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7738503	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7750035	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7751614	0.81[CEU][hapmap]
rs7763017	0.82[EUR][1000 genomes]
rs7766690	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767952	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7770125	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9376812	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376813	0.81[EUR][1000 genomes]
rs9376814	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386062	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390159	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399474	0.93[ASN][1000 genomes]
rs9403554	0.93[EUR][1000 genomes]
rs9403555	0.93[EUR][1000 genomes]
rs9403558	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:144545400-144550200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:144545400-144550400	Weak transcription	HSMM	muscle
6	chr6:144549600-144550800	Enhancers	HSMMtube	muscle

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