Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:144537199..144539780-chr6:144540213..144543149,3	MCF-7	breast:
2	chr6:144541086..144544074-chr6:144777105..144778717,2	K562	blood:
3	chr6:144499605..144501312-chr6:144540147..144541941,2	K562	blood:
4	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
5	chr6:144540620..144542713-chr6:144546174..144548054,2	MCF-7	breast:
6	chr6:144540350..144543200-chr6:144548789..144551846,3	MCF-7	breast:
7	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12529594	0.83[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs12664476	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1535476	0.81[EUR][1000 genomes]
rs1547622	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1985845	0.89[ASN][1000 genomes]
rs4895636	0.82[EUR][1000 genomes]
rs4896707	0.84[EUR][1000 genomes]
rs4896708	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61371300	0.80[EUR][1000 genomes]
rs6570613	0.88[EUR][1000 genomes]
rs6570618	0.92[CEU][hapmap]
rs6904683	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs6930813	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6941329	0.87[CEU][hapmap]
rs7751614	0.81[CEU][hapmap]
rs7770125	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9403554	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403555	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403557	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144538800-144544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:144538800-144544800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:144541000-144541600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:144541000-144541600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:144541000-144541800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:144541000-144541800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:144541200-144541800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:144541200-144542000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:144541200-144542800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:144541400-144541600	Enhancers	HSMMtube	muscle
13	chr6:144541400-144544200	Weak transcription	HSMM	muscle

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