Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144572697..144575302-chr6:144580534..144582260,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1124956	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs12664476	0.80[CEU][hapmap]
rs1322451	0.85[ASN][1000 genomes]
rs1535476	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895636	0.81[ASN][1000 genomes]
rs4896707	0.81[ASN][1000 genomes]
rs6570614	0.81[ASN][1000 genomes]
rs6904683	0.81[CEU][hapmap]
rs6930813	0.96[CEU][hapmap]
rs6941329	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs7738503	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7750035	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7751614	0.81[CEU][hapmap]
rs7765978	0.83[EUR][1000 genomes]
rs7766690	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7767952	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs9376814	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9386062	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390159	0.83[ASN][1000 genomes]
rs9399474	0.85[ASN][1000 genomes]
rs9403558	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144569400-144581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:144569800-144585200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:144571600-144581800	Weak transcription	HSMMtube	muscle
4	chr6:144579000-144580800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:144579200-144580800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:144580200-144582400	Enhancers	Osteobl	bone
7	chr6:144580400-144581600	Enhancers	Brain Germinal Matrix	brain

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