Variant report

Variant	rs9386062
Chromosome Location	chr6:144569975-144569976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1124956	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12664476	0.80[CEU][hapmap]
rs1322451	0.91[ASN][1000 genomes]
rs1535476	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895635	0.81[CHB][hapmap]
rs4895636	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896707	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896708	0.82[EUR][1000 genomes]
rs6570613	0.85[ASN][1000 genomes]
rs6570614	0.87[ASN][1000 genomes]
rs6570618	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6904683	0.81[CEU][hapmap]
rs6930813	0.96[CEU][hapmap]
rs6941329	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs7738503	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750035	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7751614	0.81[CEU][hapmap]
rs7765978	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7766690	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7767952	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7770125	0.80[EUR][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs9376814	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390159	0.89[ASN][1000 genomes]
rs9399474	0.91[ASN][1000 genomes]
rs9403558	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144568400-144574000	Weak transcription	Fetal Heart	heart
2	chr6:144569200-144570000	Enhancers	Fetal Muscle Leg	muscle
3	chr6:144569200-144570800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:144569200-144571000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144569200-144571200	Enhancers	HSMM	muscle
6	chr6:144569200-144571600	Enhancers	HSMMtube	muscle
7	chr6:144569400-144570000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:144569400-144570000	Enhancers	Osteobl	bone
9	chr6:144569400-144571000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:144569400-144571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:144569400-144571000	Enhancers	NH-A	brain
12	chr6:144569400-144571200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:144569400-144571400	Enhancers	NHLF	lung
14	chr6:144569400-144581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:144569600-144570600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:144569800-144570800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:144569800-144571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:144569800-144571000	Flanking Active TSS	NHDF-Ad	bronchial
19	chr6:144569800-144571200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:144569800-144585200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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