Variant report

Variant	rs4896708
Chromosome Location	chr6:144543088-144543089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144537199..144539780-chr6:144540213..144543149,3	MCF-7	breast:
2	chr6:144541086..144544074-chr6:144777105..144778717,2	K562	blood:
3	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
4	chr6:144540350..144543200-chr6:144548789..144551846,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1124956	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12529594	0.88[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1322450	0.81[EUR][1000 genomes]
rs1322451	0.80[EUR][1000 genomes]
rs1535476	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1547622	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1985845	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2146170	0.82[AFR][1000 genomes]
rs4286803	0.81[LWK][hapmap];0.87[MEX][hapmap]
rs4895635	0.83[MEX][hapmap]
rs4895636	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4896707	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6570613	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570614	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6570618	1.00[CEU][hapmap]
rs6903349	0.81[AFR][1000 genomes]
rs6930813	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941329	0.87[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs7750035	0.82[EUR][1000 genomes]
rs7751614	0.82[AFR][1000 genomes]
rs7763017	0.81[EUR][1000 genomes]
rs7766690	0.82[EUR][1000 genomes]
rs7767952	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7770125	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9376813	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376814	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9386062	0.82[EUR][1000 genomes]
rs9390159	0.81[EUR][1000 genomes]
rs9403554	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403555	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403557	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4896708	GPR126	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144538800-144544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:144538800-144544800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:144541400-144544200	Weak transcription	HSMM	muscle
6	chr6:144541600-144544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:144541600-144544400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:144541800-144544400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:144542000-144549600	Weak transcription	HSMMtube	muscle
10	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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