Variant report

Variant	rs2146170
Chromosome Location	chr6:144529877-144529878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144529710..144531964-chr6:144532893..144535500,2	K562	blood:
2	chr6:144528833..144531316-chr6:144534219..144536823,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10872568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11155349	0.80[EUR][1000 genomes]
rs12661628	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs12664476	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4286803	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4446579	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4895635	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4895636	0.81[AFR][1000 genomes]
rs4896706	0.98[ASN][1000 genomes]
rs4896708	0.82[AFR][1000 genomes]
rs61371300	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62428913	0.99[ASN][1000 genomes]
rs6570611	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6570613	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6570618	0.81[CEU][hapmap]
rs6903349	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6903726	0.99[ASN][1000 genomes]
rs6904683	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930813	0.84[CEU][hapmap]
rs6941329	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7747712	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7751614	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321966	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9376812	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs941937	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3340901	chr6:144529309-144531807	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144522200-144530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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