Variant report

Variant	rs6570613
Chromosome Location	chr6:144541624-144541625
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144537199..144539780-chr6:144540213..144543149,3	MCF-7	breast:
2	chr6:144541086..144544074-chr6:144777105..144778717,2	K562	blood:
3	chr6:144499605..144501312-chr6:144540147..144541941,2	K562	blood:
4	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
5	chr6:144540620..144542713-chr6:144546174..144548054,2	MCF-7	breast:
6	chr6:144540350..144543200-chr6:144548789..144551846,3	MCF-7	breast:
7	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1124956	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664476	0.88[CEU][hapmap]
rs1322451	0.89[ASN][1000 genomes]
rs1535476	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2146170	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4286803	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4446579	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4895635	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4895636	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896707	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896708	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570611	0.84[EUR][1000 genomes]
rs6570614	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570618	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs6903349	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6904683	0.88[CEU][hapmap]
rs6930813	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6941329	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7738503	0.84[ASN][1000 genomes]
rs7750035	0.88[ASN][1000 genomes]
rs7751614	0.81[CEU][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7766690	0.87[ASN][1000 genomes]
rs7767952	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7770125	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376813	0.88[EUR][1000 genomes]
rs9376814	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386062	0.85[ASN][1000 genomes]
rs9390159	0.87[ASN][1000 genomes]
rs9399474	0.89[ASN][1000 genomes]
rs9403554	0.85[EUR][1000 genomes]
rs9403555	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144538800-144544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:144538800-144544800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:144541000-144541800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:144541000-144541800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:144541200-144541800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:144541200-144542000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:144541200-144542800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:144541400-144544200	Weak transcription	HSMM	muscle
11	chr6:144541600-144541800	Flanking Active TSS	HSMMtube	muscle
12	chr6:144541600-144544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:144541600-144544400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links