Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144540620..144542713-chr6:144546174..144548054,2	MCF-7	breast:
2	chr6:144546072..144548872-chr6:144549904..144552133,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1124956	0.92[EUR][1000 genomes]
rs12529594	0.91[ASN][1000 genomes]
rs12661628	0.84[EUR][1000 genomes]
rs1322450	0.88[EUR][1000 genomes]
rs1322451	0.87[EUR][1000 genomes]
rs1535476	0.93[EUR][1000 genomes]
rs1547622	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1985845	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895636	0.92[EUR][1000 genomes]
rs4896707	0.90[EUR][1000 genomes]
rs4896708	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570613	0.85[EUR][1000 genomes]
rs6570614	0.82[EUR][1000 genomes]
rs6930813	0.90[ASN][1000 genomes]
rs7763017	0.88[EUR][1000 genomes]
rs7767952	0.92[EUR][1000 genomes]
rs7770125	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376812	0.84[EUR][1000 genomes]
rs9376813	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376814	0.92[EUR][1000 genomes]
rs9390159	0.87[EUR][1000 genomes]
rs9403554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403557	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144542000-144549600	Weak transcription	HSMMtube	muscle
4	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:144545400-144550200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:144545400-144550400	Weak transcription	HSMM	muscle
7	chr6:144546600-144547000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:144546600-144547000	Enhancers	Monocytes-CD14+_RO01746	blood

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