Variant report

Variant	rs9403557
Chromosome Location	chr6:144560899-144560900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12529594	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1322450	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1322451	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1547622	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1985845	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896708	0.92[ASN][1000 genomes]
rs6570614	0.81[EUR][1000 genomes]
rs6930813	0.91[ASN][1000 genomes]
rs7741762	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763017	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7770125	0.90[ASN][1000 genomes]
rs9376813	0.87[ASN][1000 genomes]
rs9390159	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9399474	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403554	0.94[ASN][1000 genomes]
rs9403555	0.95[ASN][1000 genomes]
rs9403556	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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