Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
2	chr6:144537384..144538997-chr6:144543349..144545214,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10872568	0.87[MEX][hapmap]
rs1124956	0.92[EUR][1000 genomes]
rs12529594	0.90[ASN][1000 genomes]
rs12661628	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs12664476	0.82[CEU][hapmap]
rs1322450	0.88[EUR][1000 genomes]
rs1322451	0.87[EUR][1000 genomes]
rs1535476	0.93[EUR][1000 genomes]
rs1547622	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1985845	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2502627	0.81[TSI][hapmap]
rs3822904	0.87[MEX][hapmap]
rs4895636	0.92[EUR][1000 genomes]
rs4896707	0.90[EUR][1000 genomes]
rs4896708	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570613	0.85[EUR][1000 genomes]
rs6570614	0.82[EUR][1000 genomes]
rs6570618	0.96[CEU][hapmap]
rs6904683	0.83[CEU][hapmap]
rs6930813	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs6941329	0.83[CEU][hapmap];0.84[GIH][hapmap]
rs7763017	0.88[EUR][1000 genomes]
rs7767952	0.92[EUR][1000 genomes]
rs7770125	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376812	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs9376813	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376814	0.92[EUR][1000 genomes]
rs9390159	0.87[EUR][1000 genomes]
rs9403555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403557	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9403554	GPR126	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144542000-144549600	Weak transcription	HSMMtube	muscle
4	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:144544200-144545400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:144544200-144545400	Enhancers	HSMM	muscle
7	chr6:144544400-144545400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:144544400-144545400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:144544800-144545200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:144544800-144545400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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