Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144540350..144543200-chr6:144548789..144551846,3	MCF-7	breast:
2	chr6:144546072..144548872-chr6:144549904..144552133,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1124956	0.82[EUR][1000 genomes]
rs12529594	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661628	0.91[CEU][hapmap]
rs12664476	0.82[CEU][hapmap]
rs1322450	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1322451	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1535476	0.83[EUR][1000 genomes]
rs1985845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895636	0.82[EUR][1000 genomes]
rs4896707	0.80[EUR][1000 genomes]
rs4896708	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570614	0.93[EUR][1000 genomes]
rs6570618	0.96[CEU][hapmap]
rs6904683	0.83[CEU][hapmap]
rs6930813	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6941329	0.83[CEU][hapmap];0.84[GIH][hapmap]
rs7741762	0.87[EUR][1000 genomes]
rs7763017	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7767952	0.82[EUR][1000 genomes]
rs7770125	0.89[ASN][1000 genomes]
rs9376812	0.91[CEU][hapmap]
rs9376813	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9376814	0.82[EUR][1000 genomes]
rs9390159	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9399474	0.87[EUR][1000 genomes]
rs9403554	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403555	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403556	0.87[EUR][1000 genomes]
rs9403557	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1547622	GPR126	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144543000-144550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:144545400-144550400	Weak transcription	HSMM	muscle
5	chr6:144549600-144550800	Enhancers	HSMMtube	muscle
6	chr6:144550000-144550400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:144550200-144551000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:144550200-144551200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:144550200-144551400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:144550200-144551400	Enhancers	Cortex derived primary cultured neurospheres	brain

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