Variant report

Variant	rs6930813
Chromosome Location	chr6:144538921-144538922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144470263..144473848-chr6:144535893..144539844,4	MCF-7	breast:
2	chr6:144415145..144417746-chr6:144535932..144539516,6	K562	blood:
3	chr6:144413850..144419094-chr6:144535932..144540083,10	K562	blood:
4	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
5	chr6:144537199..144539780-chr6:144540213..144543149,3	MCF-7	breast:
6	chr6:144426682..144429616-chr6:144537813..144539494,2	MCF-7	breast:
7	chr6:144492987..144496761-chr6:144536161..144539175,3	K562	blood:
8	chr6:144537384..144538997-chr6:144543349..144545214,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169976	Chromatin interaction
ENSG00000135604	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12529594	0.87[ASN][1000 genomes]
rs12661628	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12664476	0.84[CEU][hapmap]
rs1322450	0.82[EUR][1000 genomes]
rs1322451	0.81[EUR][1000 genomes]
rs1535476	0.81[EUR][1000 genomes]
rs1547622	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1985845	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4286803	0.83[CEU][hapmap]
rs4895635	0.83[CEU][hapmap]
rs4895636	0.82[EUR][1000 genomes]
rs4896707	0.84[EUR][1000 genomes]
rs4896708	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570613	0.88[EUR][1000 genomes]
rs6570614	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6570618	0.96[CEU][hapmap]
rs6904683	0.84[CEU][hapmap]
rs6941329	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs7751614	0.84[CEU][hapmap]
rs7763017	0.82[EUR][1000 genomes]
rs7770125	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376812	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9376813	0.94[ASN][1000 genomes]
rs9390159	0.81[EUR][1000 genomes]
rs9403554	0.91[ASN][1000 genomes]
rs9403555	0.90[ASN][1000 genomes]
rs9403557	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538000-144540000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr6:144538000-144540000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr6:144538000-144541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:144538200-144539000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:144538200-144539000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:144538200-144539600	Weak transcription	Fetal Thymus	thymus
7	chr6:144538200-144540000	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:144538200-144540000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:144538200-144540000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:144538200-144540000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:144538200-144540200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:144538200-144550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:144538400-144539600	Weak transcription	Primary B cells from cord blood	blood
15	chr6:144538400-144539800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:144538400-144540400	Enhancers	Primary T cells from cord blood	blood
17	chr6:144538600-144539000	Enhancers	Colon Smooth Muscle	Colon
18	chr6:144538600-144539000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:144538600-144539200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:144538600-144539400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:144538600-144539600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:144538600-144539600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:144538600-144539800	Weak transcription	Brain Substantia Nigra	brain
24	chr6:144538600-144539800	Weak transcription	Small Intestine	intestine
25	chr6:144538600-144540000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:144538600-144540400	Weak transcription	Brain Anterior Caudate	brain
27	chr6:144538600-144541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:144538800-144539000	Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr6:144538800-144539000	Enhancers	Adipose Nuclei	Adipose
30	chr6:144538800-144539000	Enhancers	Brain Hippocampus Middle	brain
31	chr6:144538800-144539000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:144538800-144539000	Enhancers	Stomach Smooth Muscle	stomach
33	chr6:144538800-144539000	Enhancers	HepG2	liver
34	chr6:144538800-144539000	Enhancers	NHDF-Ad	bronchial
35	chr6:144538800-144539200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:144538800-144539200	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr6:144538800-144539200	Enhancers	K562	blood
38	chr6:144538800-144539600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:144538800-144539600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:144538800-144539800	Weak transcription	Thymus	Thymus
41	chr6:144538800-144540000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:144538800-144540000	Enhancers	Dnd41	blood
43	chr6:144538800-144540400	Weak transcription	Fetal Heart	heart
44	chr6:144538800-144540600	Weak transcription	HSMM	muscle
45	chr6:144538800-144541000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:144538800-144541000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:144538800-144541000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:144538800-144541000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:144538800-144541000	Weak transcription	HSMMtube	muscle
50	chr6:144538800-144541200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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