Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1124956	0.82[EUR][1000 genomes]
rs12529594	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1322450	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1322451	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1535476	0.83[EUR][1000 genomes]
rs1547622	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895636	0.82[EUR][1000 genomes]
rs4896708	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570614	0.92[EUR][1000 genomes]
rs6930813	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7741762	0.88[EUR][1000 genomes]
rs7763017	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7767952	0.82[EUR][1000 genomes]
rs7770125	0.91[ASN][1000 genomes]
rs9376813	0.89[ASN][1000 genomes]
rs9376814	0.82[EUR][1000 genomes]
rs9390159	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9399474	0.87[EUR][1000 genomes]
rs9403554	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403555	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403556	0.88[EUR][1000 genomes]
rs9403557	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144550800-144553400	Weak transcription	HSMMtube	muscle
3	chr6:144550800-144554800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:144551000-144553200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:144551200-144553600	Weak transcription	HSMM	muscle

Quick Search: