Variant report

Variant	rs9376812
Chromosome Location	chr6:144537937-144537938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144525272..144527107-chr6:144534912..144538117,3	K562	blood:
2	chr6:144494396..144496761-chr6:144536161..144538816,2	K562	blood:
3	chr6:144471017..144473843-chr6:144535410..144538826,5	MCF-7	breast:
4	chr6:144470263..144473848-chr6:144535893..144539844,4	MCF-7	breast:
5	chr6:144537119..144538830-chr6:146133579..146136524,2	K562	blood:
6	chr6:144536732..144538838-chr6:144605826..144609258,3	MCF-7	breast:
7	chr6:144426096..144427058-chr6:144537841..144538471,2	MCF-7	breast:
8	chr6:144532894..144534815-chr6:144536500..144538631,2	K562	blood:
9	chr6:144415145..144417746-chr6:144535932..144539516,6	K562	blood:
10	chr6:144470756..144471885-chr6:144536909..144538006,3	MCF-7	breast:
11	chr6:144263183..144263880-chr6:144537320..144538300,2	K562	blood:
12	chr6:144413850..144419094-chr6:144535932..144540083,10	K562	blood:
13	chr6:144533845..144538610-chr6:144604054..144608164,4	MCF-7	breast:
14	chr6:144470608..144472359-chr6:144536982..144538852,2	K562	blood:
15	chr6:144537150..144540500-chr6:144540996..144546347,5	K562	blood:
16	chr6:144537199..144539780-chr6:144540213..144543149,3	MCF-7	breast:
17	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:
18	chr6:144537501..144538440-chr6:144803043..144803811,2	MCF-7	breast:
19	chr6:144426682..144429616-chr6:144537813..144539494,2	MCF-7	breast:
20	chr6:144417405..144419567-chr6:144536912..144538787,2	MCF-7	breast:
21	chr6:144476586..144479088-chr6:144535900..144538153,2	MCF-7	breast:
22	chr6:144492987..144496761-chr6:144536161..144539175,3	K562	blood:
23	chr6:144537384..144538997-chr6:144543349..144545214,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135604	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000152818	Chromatin interaction
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1124956	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12661628	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12664476	0.83[CEU][hapmap]
rs1322451	0.86[ASN][1000 genomes]
rs1535476	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2146170	0.83[EUR][1000 genomes]
rs4286803	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4446579	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4895635	0.83[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895636	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896707	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896708	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570611	0.84[EUR][1000 genomes]
rs6570613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570614	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570618	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs6903349	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6904683	0.84[CEU][hapmap]
rs6930813	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6941329	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7738503	0.81[ASN][1000 genomes]
rs7750035	0.85[ASN][1000 genomes]
rs7751614	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7766690	0.84[ASN][1000 genomes]
rs7767952	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7770125	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9376813	0.88[EUR][1000 genomes]
rs9376814	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386062	0.82[ASN][1000 genomes]
rs9390159	0.84[ASN][1000 genomes]
rs9399474	0.86[ASN][1000 genomes]
rs9403554	0.84[EUR][1000 genomes]
rs9403555	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144536600-144538200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:144536600-144538200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:144536600-144538200	Active TSS	Small Intestine	intestine
4	chr6:144536600-144538400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:144536600-144538400	Active TSS	Fetal Kidney	kidney
6	chr6:144536600-144538600	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:144536600-144538600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:144536800-144538000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:144536800-144538000	Active TSS	Sigmoid Colon	Sigmoid Colon
10	chr6:144536800-144538200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:144536800-144538200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:144536800-144538200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:144536800-144538200	Active TSS	Aorta	Aorta
14	chr6:144536800-144538200	Active TSS	Fetal Brain Female	brain
15	chr6:144536800-144538200	Active TSS	Left Ventricle	heart
16	chr6:144536800-144538200	Active TSS	Psoas Muscle	Psoas
17	chr6:144536800-144538200	Active TSS	Right Ventricle	heart
18	chr6:144536800-144538800	Active TSS	Ovary	ovary
19	chr6:144537000-144538000	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr6:144537000-144538000	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:144537000-144538000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:144537000-144538000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:144537000-144538000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:144537000-144538000	Active TSS	Esophagus	oesophagus
25	chr6:144537000-144538000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr6:144537000-144538000	Active TSS	Lung	lung
27	chr6:144537000-144538000	Active TSS	Pancreas	Pancrea
28	chr6:144537000-144538000	Bivalent/Poised TSS	HepG2	liver
29	chr6:144537000-144538200	Active TSS	Brain Cingulate Gyrus	brain
30	chr6:144537000-144538200	Active TSS	Brain Substantia Nigra	brain
31	chr6:144537000-144538200	Active TSS	Colon Smooth Muscle	Colon
32	chr6:144537000-144538200	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:144537000-144538200	Active TSS	Fetal Brain Male	brain
34	chr6:144537000-144538200	Active TSS	Fetal Intestine Small	intestine
35	chr6:144537000-144538200	Active TSS	Placenta	Placenta
36	chr6:144537000-144538200	Active TSS	Rectal Smooth Muscle	rectum
37	chr6:144537000-144538200	Active TSS	Stomach Mucosa	stomach
38	chr6:144537000-144538200	Active TSS	Thymus	Thymus
39	chr6:144537000-144538200	Active TSS	Osteobl	bone
40	chr6:144537000-144538400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:144537000-144538400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:144537000-144538400	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr6:144537000-144538400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:144537000-144538400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:144537000-144538400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:144537000-144538400	Active TSS	Brain Angular Gyrus	brain
47	chr6:144537000-144538400	Active TSS	Brain Anterior Caudate	brain
48	chr6:144537000-144538400	Active TSS	Fetal Stomach	stomach
49	chr6:144537000-144538400	Active TSS	Placenta Amnion	Placenta Amnion
50	chr6:144537000-144538400	Active TSS	GM12878-XiMat	blood

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