Variant report

Variant	rs7738503
Chromosome Location	chr6:144570837-144570838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1124956	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12661628	0.96[CEU][hapmap];0.81[ASN][1000 genomes]
rs12664476	0.80[CEU][hapmap]
rs1322451	0.90[ASN][1000 genomes]
rs1535476	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895636	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896707	0.86[ASN][1000 genomes]
rs6570613	0.84[ASN][1000 genomes]
rs6570614	0.86[ASN][1000 genomes]
rs6570618	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6904683	0.81[CEU][hapmap]
rs6930813	0.96[CEU][hapmap]
rs6941329	0.87[CEU][hapmap]
rs7750035	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7751614	0.81[CEU][hapmap]
rs7765978	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7766690	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7767952	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376812	0.96[CEU][hapmap];0.81[ASN][1000 genomes]
rs9376814	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386062	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390159	0.88[ASN][1000 genomes]
rs9399474	0.90[ASN][1000 genomes]
rs9403558	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144568400-144574000	Weak transcription	Fetal Heart	heart
2	chr6:144569200-144571000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:144569200-144571200	Enhancers	HSMM	muscle
4	chr6:144569200-144571600	Enhancers	HSMMtube	muscle
5	chr6:144569400-144571000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:144569400-144571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:144569400-144571000	Enhancers	NH-A	brain
8	chr6:144569400-144571200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:144569400-144571400	Enhancers	NHLF	lung
10	chr6:144569400-144581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:144569800-144571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:144569800-144571000	Flanking Active TSS	NHDF-Ad	bronchial
13	chr6:144569800-144571200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:144569800-144585200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:144570000-144571000	Flanking Active TSS	Osteobl	bone
16	chr6:144570200-144571000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:144570400-144571000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:144570400-144571200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:144570400-144572000	Enhancers	Fetal Muscle Leg	muscle
20	chr6:144570600-144571000	Enhancers	Fetal Thymus	thymus
21	chr6:144570600-144571600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:144570600-144572600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:144570800-144571200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:144570800-144572000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:144570800-144573000	Weak transcription	Aorta	Aorta

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