Variant report

Variant	rs4901524
Chromosome Location	chr14:55071322-55071323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55071007..55075462-chr14:55079366..55082091,5	MCF-7	breast:
2	chr14:55064994..55066863-chr14:55068485..55071665,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10498468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17127668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4901525	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs60837271	0.87[ASN][1000 genomes]
rs61975128	0.89[ASN][1000 genomes]
rs66466453	1.00[AFR][1000 genomes]
rs7143538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143769	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144614	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8021712	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55036200-55073000	Weak transcription	Pancreas	Pancrea
2	chr14:55047000-55072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:55047200-55072800	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:55048200-55072800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:55058200-55073000	Weak transcription	Brain Substantia Nigra	brain
7	chr14:55058800-55073000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:55059200-55073000	Weak transcription	Spleen	Spleen
9	chr14:55061200-55072800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:55061200-55072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:55061200-55073000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:55064800-55078000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:55066000-55073400	Enhancers	Fetal Heart	heart
14	chr14:55066200-55072600	Enhancers	NHDF-Ad	bronchial
15	chr14:55066800-55071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:55067000-55072800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:55067000-55073000	Weak transcription	Adipose Nuclei	Adipose
18	chr14:55067000-55078000	Weak transcription	Fetal Stomach	stomach
19	chr14:55067200-55072600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:55067200-55073000	Weak transcription	A549	lung
21	chr14:55067200-55078000	Weak transcription	Fetal Lung	lung
22	chr14:55067400-55073600	Weak transcription	HepG2	liver
23	chr14:55067600-55072800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:55067600-55072800	Weak transcription	Brain Anterior Caudate	brain
25	chr14:55067600-55072800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:55067600-55073400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:55067600-55080800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr14:55067800-55072600	Weak transcription	HSMMtube	muscle
29	chr14:55067800-55072600	Weak transcription	NH-A	brain
30	chr14:55067800-55073000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:55067800-55073000	Weak transcription	Aorta	Aorta
32	chr14:55067800-55073000	Weak transcription	Ovary	ovary
33	chr14:55068600-55072600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:55069000-55071800	Enhancers	Psoas Muscle	Psoas
35	chr14:55069600-55071600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:55069600-55071800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr14:55069600-55072400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:55069600-55073600	Enhancers	Osteobl	bone
39	chr14:55069600-55074000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr14:55069600-55074400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:55070400-55072000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:55070400-55072600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:55070400-55072600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr14:55070400-55072800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:55070400-55072800	Weak transcription	Fetal Muscle Leg	muscle
46	chr14:55070400-55073000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:55070400-55073000	Weak transcription	Right Ventricle	heart
48	chr14:55070400-55116200	Weak transcription	HMEC	breast
49	chr14:55070600-55072200	Strong transcription	HUVEC	blood vessel
50	chr14:55070600-55072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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