Variant report

Variant	rs7143769
Chromosome Location	chr14:55074447-55074448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55071007..55075462-chr14:55079366..55082091,5	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10498468	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17127668	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4901524	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4901525	0.89[ASN][1000 genomes]
rs60837271	0.91[ASN][1000 genomes]
rs61975128	0.89[ASN][1000 genomes]
rs66466453	1.00[AFR][1000 genomes]
rs7143538	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143681	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144614	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8021712	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55064800-55078000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:55067000-55078000	Weak transcription	Fetal Stomach	stomach
4	chr14:55067200-55078000	Weak transcription	Fetal Lung	lung
5	chr14:55067600-55080800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:55070400-55116200	Weak transcription	HMEC	breast
7	chr14:55072200-55076000	Weak transcription	HUVEC	blood vessel
8	chr14:55073400-55077800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:55073400-55091000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:55073600-55076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:55073800-55074800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:55073800-55075000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:55073800-55077200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:55073800-55077400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:55073800-55080000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:55073800-55080200	Weak transcription	A549	lung
17	chr14:55073800-55092000	Weak transcription	Spleen	Spleen
18	chr14:55074000-55074800	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:55074000-55074800	Weak transcription	HepG2	liver
20	chr14:55074000-55075400	Enhancers	Fetal Heart	heart
21	chr14:55074000-55075800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:55074000-55075800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:55074000-55075800	Weak transcription	Adipose Nuclei	Adipose
24	chr14:55074000-55075800	Enhancers	NHDF-Ad	bronchial
25	chr14:55074000-55076200	Weak transcription	Brain Anterior Caudate	brain
26	chr14:55074000-55076200	Weak transcription	NH-A	brain
27	chr14:55074000-55076400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:55074000-55076400	Weak transcription	Brain Substantia Nigra	brain
29	chr14:55074000-55076600	Weak transcription	Aorta	Aorta
30	chr14:55074000-55076600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:55074000-55076800	Weak transcription	Ovary	ovary
32	chr14:55074000-55077000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:55074000-55077000	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:55074000-55077000	Weak transcription	HSMMtube	muscle
35	chr14:55074000-55077000	Weak transcription	NHEK	skin
36	chr14:55074000-55078000	Weak transcription	Left Ventricle	heart
37	chr14:55074000-55081600	Weak transcription	Psoas Muscle	Psoas
38	chr14:55074000-55081600	Weak transcription	Right Ventricle	heart
39	chr14:55074000-55081600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr14:55074000-55081800	Weak transcription	Lung	lung
41	chr14:55074000-55084800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:55074000-55089400	Weak transcription	Right Atrium	heart
43	chr14:55074000-55089600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:55074000-55089600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr14:55074000-55091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:55074200-55076000	Weak transcription	NHLF	lung
47	chr14:55074200-55076200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:55074200-55076200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr14:55074200-55076400	Weak transcription	Osteobl	bone
50	chr14:55074200-55076600	Weak transcription	HSMM	muscle

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