Variant report

Variant	rs4901525
Chromosome Location	chr14:55083102-55083103
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55034399..55036887-chr14:55081851..55083593,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10498468	0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs17127668	0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs4901524	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs60837271	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61975128	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143538	0.91[ASN][1000 genomes]
rs7143681	0.89[ASN][1000 genomes]
rs7143769	0.89[ASN][1000 genomes]
rs7144614	0.90[ASN][1000 genomes]
rs8021712	0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55070400-55116200	Weak transcription	HMEC	breast
3	chr14:55073400-55091000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:55073800-55092000	Weak transcription	Spleen	Spleen
5	chr14:55074000-55084800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:55074000-55089400	Weak transcription	Right Atrium	heart
7	chr14:55074000-55089600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:55074000-55089600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:55074000-55091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:55074200-55088600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:55076200-55084800	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:55076600-55087600	Weak transcription	HUVEC	blood vessel
13	chr14:55077600-55084000	Weak transcription	NHEK	skin
14	chr14:55077600-55092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:55077800-55089200	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:55078200-55088400	Weak transcription	Adipose Nuclei	Adipose
17	chr14:55078200-55091200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:55078400-55083800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:55078400-55083800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:55078400-55088200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:55078400-55091200	Weak transcription	Fetal Stomach	stomach
22	chr14:55078800-55089400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:55078800-55094000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:55078800-55094000	Weak transcription	HSMMtube	muscle
25	chr14:55079000-55084000	Weak transcription	NHDF-Ad	bronchial
26	chr14:55079600-55084400	Weak transcription	NHLF	lung
27	chr14:55079600-55087600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:55080000-55089200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:55080200-55087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:55080200-55089200	Weak transcription	Left Ventricle	heart
31	chr14:55080800-55084200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:55080800-55086400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:55080800-55087600	Weak transcription	HepG2	liver
34	chr14:55081400-55084000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:55081600-55083200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:55081800-55083200	Weak transcription	Gastric	stomach
37	chr14:55081800-55084000	Weak transcription	Osteobl	bone
38	chr14:55081800-55084400	Weak transcription	HSMM	muscle
39	chr14:55082000-55084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:55082000-55084400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:55082000-55088400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:55082000-55089000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:55082000-55089000	Weak transcription	Aorta	Aorta
44	chr14:55082000-55089400	Weak transcription	Lung	lung
45	chr14:55082200-55084400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:55082400-55086400	Weak transcription	Psoas Muscle	Psoas
47	chr14:55083000-55083400	Enhancers	Fetal Heart	heart
48	chr14:55083000-55083400	Enhancers	Right Ventricle	heart
49	chr14:55083000-55088000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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