Variant report

Variant	rs8021712
Chromosome Location	chr14:55073713-55073714
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55071007..55075462-chr14:55079366..55082091,5	MCF-7	breast:
2	chr14:55071586..55074009-chr14:55220452..55221970,2	K562	blood:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10498468	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17127668	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4901524	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4901525	0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs60837271	0.87[ASN][1000 genomes]
rs61975128	0.90[ASN][1000 genomes]
rs66466453	1.00[AFR][1000 genomes]
rs7143538	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143681	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143769	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144614	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55064800-55078000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:55067000-55078000	Weak transcription	Fetal Stomach	stomach
4	chr14:55067200-55078000	Weak transcription	Fetal Lung	lung
5	chr14:55067600-55080800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:55069600-55074000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:55069600-55074400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:55070400-55116200	Weak transcription	HMEC	breast
9	chr14:55072000-55074200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:55072000-55074200	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:55072200-55074000	Enhancers	NHEK	skin
12	chr14:55072200-55076000	Weak transcription	HUVEC	blood vessel
13	chr14:55072600-55073800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr14:55072600-55074000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:55072600-55074000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr14:55072600-55074000	Enhancers	NH-A	brain
17	chr14:55072800-55073800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:55072800-55073800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:55072800-55073800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:55072800-55074000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:55072800-55074000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:55072800-55074000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr14:55072800-55074000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:55072800-55074000	Enhancers	Brain Angular Gyrus	brain
25	chr14:55072800-55074000	Enhancers	Brain Anterior Caudate	brain
26	chr14:55072800-55074000	Enhancers	Fetal Muscle Trunk	muscle
27	chr14:55072800-55074000	Enhancers	Fetal Muscle Leg	muscle
28	chr14:55072800-55074000	Enhancers	Psoas Muscle	Psoas
29	chr14:55072800-55074000	Enhancers	Right Atrium	heart
30	chr14:55072800-55074200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr14:55072800-55074200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:55073000-55073800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:55073000-55073800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr14:55073000-55073800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:55073000-55073800	Enhancers	Brain Cingulate Gyrus	brain
36	chr14:55073000-55073800	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr14:55073000-55073800	Enhancers	Spleen	Spleen
38	chr14:55073000-55073800	Enhancers	A549	lung
39	chr14:55073000-55074000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:55073000-55074000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:55073000-55074000	Enhancers	Adipose Nuclei	Adipose
42	chr14:55073000-55074000	Enhancers	Aorta	Aorta
43	chr14:55073000-55074000	Enhancers	Brain Substantia Nigra	brain
44	chr14:55073000-55074000	Enhancers	Left Ventricle	heart
45	chr14:55073000-55074000	Enhancers	Lung	lung
46	chr14:55073000-55074000	Enhancers	Ovary	ovary
47	chr14:55073000-55074000	Enhancers	Right Ventricle	heart
48	chr14:55073200-55074000	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:55073200-55074200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr14:55073200-55074200	Enhancers	NHLF	lung

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