Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12881810	0.86[JPT][hapmap]
rs2238180	0.86[JPT][hapmap]
rs2238183	0.86[JPT][hapmap]
rs2238186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs2238188	0.87[ASN][1000 genomes]
rs2283382	0.84[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs3784045	0.84[CEU][hapmap]
rs3784047	0.84[CEU][hapmap]
rs4140998	0.80[CEU][hapmap]
rs4903021	0.89[ASN][1000 genomes]
rs7156512	0.84[CEU][hapmap]
rs758266	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72913800-72922600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72917400-72921000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:72917600-72921400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:72918000-72924400	Weak transcription	Spleen	Spleen
5	chr14:72918000-72930000	Weak transcription	Right Atrium	heart
6	chr14:72918200-72929000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:72918200-72930000	Weak transcription	Left Ventricle	heart
8	chr14:72918400-72924200	Weak transcription	HSMM	muscle
9	chr14:72918800-72924200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:72919000-72924200	Weak transcription	NH-A	brain
11	chr14:72919000-72931400	Weak transcription	Adipose Nuclei	Adipose
12	chr14:72919400-72921200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:72919400-72926800	Weak transcription	Fetal Intestine Small	intestine
14	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
15	chr14:72919800-72921200	Weak transcription	Fetal Kidney	kidney
16	chr14:72919800-72923200	Weak transcription	Esophagus	oesophagus
17	chr14:72919800-72924000	Weak transcription	HSMMtube	muscle
18	chr14:72919800-72924400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:72919800-72927400	Weak transcription	Fetal Muscle Leg	muscle
20	chr14:72920000-72921000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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