Variant report

Variant	rs4907183
Chromosome Location	chr1:84314288-84314289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12135529	0.91[ASN][1000 genomes]
rs1408476	0.82[ASN][1000 genomes]
rs1408477	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830825	0.82[ASN][1000 genomes]
rs1830827	0.82[ASN][1000 genomes]
rs4001466	0.88[ASN][1000 genomes]
rs4907041	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66660738	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673159	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6676587	0.81[ASN][1000 genomes]
rs6680860	0.86[ASN][1000 genomes]
rs6690239	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696585	0.88[ASN][1000 genomes]
rs6699405	0.94[JPT][hapmap]
rs7552393	0.94[JPT][hapmap]
rs932448	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523508	chr1:84310193-84314754	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84310800-84324400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:84311200-84315200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:84311200-84315600	Weak transcription	Small Intestine	intestine
5	chr1:84311200-84321200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:84311400-84323800	Weak transcription	Primary T cells from cord blood	blood
7	chr1:84311800-84316400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:84312200-84316000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:84312200-84316400	Weak transcription	Liver	Liver
10	chr1:84312400-84322600	Weak transcription	Fetal Brain Female	brain
11	chr1:84312600-84315400	Weak transcription	Fetal Brain Male	brain
12	chr1:84313400-84314400	Enhancers	Fetal Intestine Small	intestine
13	chr1:84314200-84316000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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