Variant report

Variant	rs6673159
Chromosome Location	chr1:84302556-84302557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12135529	0.89[ASN][1000 genomes]
rs1408476	0.80[ASN][1000 genomes]
rs1408477	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830825	0.80[ASN][1000 genomes]
rs1830827	0.80[ASN][1000 genomes]
rs4001466	0.86[ASN][1000 genomes]
rs4907041	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4907183	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66660738	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6680860	0.84[ASN][1000 genomes]
rs6690239	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6696585	0.86[ASN][1000 genomes]
rs932448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84285800-84305000	Weak transcription	Liver	Liver
3	chr1:84295400-84309000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:84295400-84310200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:84297600-84313000	Weak transcription	Aorta	Aorta
6	chr1:84301800-84310200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:84302400-84302800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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