Variant report

Variant	rs4001466
Chromosome Location	chr1:84285240-84285241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11163849	0.91[EUR][1000 genomes]
rs12116654	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12134669	0.83[EUR][1000 genomes]
rs12135529	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12144970	0.85[EUR][1000 genomes]
rs12406928	0.88[EUR][1000 genomes]
rs1408476	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408477	0.86[ASN][1000 genomes]
rs1830825	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1830827	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007415	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2296257	0.83[EUR][1000 genomes]
rs4140462	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4907041	0.88[ASN][1000 genomes]
rs4907183	0.88[ASN][1000 genomes]
rs66660738	0.91[ASN][1000 genomes]
rs6673159	0.86[ASN][1000 genomes]
rs6676587	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6680860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6690239	0.91[ASN][1000 genomes]
rs6696585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551130	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs932448	0.86[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84281600-84288400	Weak transcription	NHDF-Ad	bronchial
3	chr1:84281600-84293000	Weak transcription	Fetal Heart	heart
4	chr1:84283200-84286600	Enhancers	Placenta	Placenta
5	chr1:84283600-84286000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:84283800-84285800	Enhancers	Liver	Liver
7	chr1:84284000-84285600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr1:84284200-84285400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:84284200-84285400	Enhancers	Adipose Nuclei	Adipose
10	chr1:84284400-84285400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:84284600-84285400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:84284600-84285400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:84284800-84285400	Enhancers	Small Intestine	intestine
14	chr1:84285000-84285400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:84285000-84285400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr1:84285000-84285600	ZNF genes & repeats	Fetal Intestine Large	intestine
17	chr1:84285000-84286000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:84285200-84285400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:84285200-84285400	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr1:84285200-84285800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:84285200-84288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:84285200-84288400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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