Variant report

Variant	rs12116654
Chromosome Location	chr1:84270215-84270216
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11163849	0.89[EUR][1000 genomes]
rs12135529	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12144970	0.86[EUR][1000 genomes]
rs12406928	0.84[EUR][1000 genomes]
rs1408476	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830825	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830827	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2007415	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4001466	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66660738	0.82[ASN][1000 genomes]
rs6676587	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6680860	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6690239	0.82[ASN][1000 genomes]
rs6696585	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7551130	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84265800-84270400	Weak transcription	Pancreas	Pancrea
2	chr1:84268400-84270400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:84268800-84270400	Weak transcription	Aorta	Aorta
4	chr1:84268800-84273400	Weak transcription	Adipose Nuclei	Adipose
5	chr1:84268800-84273600	Weak transcription	Liver	Liver
6	chr1:84270200-84270400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr1:84270200-84270800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:84270200-84271000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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