Variant report

Variant	rs7551130
Chromosome Location	chr1:84268628-84268629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTLL7-2	chr1:84267199-84268934	ENSG00000233008

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11163849	0.90[EUR][1000 genomes]
rs12116654	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135529	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12144970	0.87[EUR][1000 genomes]
rs12406928	0.85[EUR][1000 genomes]
rs1408476	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830825	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830827	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2007415	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296257	0.80[EUR][1000 genomes]
rs4001466	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140462	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66660738	0.82[ASN][1000 genomes]
rs6676587	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6680860	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6690239	0.82[ASN][1000 genomes]
rs6696585	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84262800-84268800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:84265800-84270400	Weak transcription	Pancreas	Pancrea
3	chr1:84267200-84268800	Enhancers	Stomach Smooth Muscle	stomach
4	chr1:84267600-84268800	Enhancers	Liver	Liver
5	chr1:84267600-84268800	Enhancers	Colon Smooth Muscle	Colon
6	chr1:84267600-84268800	Enhancers	Fetal Heart	heart
7	chr1:84267600-84269400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:84267800-84268800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:84267800-84268800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:84267800-84268800	Enhancers	Adipose Nuclei	Adipose
11	chr1:84267800-84268800	Enhancers	Aorta	Aorta
12	chr1:84267800-84268800	Enhancers	Right Ventricle	heart
13	chr1:84267800-84269200	Enhancers	Fetal Intestine Large	intestine
14	chr1:84267800-84269400	Enhancers	Fetal Intestine Small	intestine
15	chr1:84268000-84268800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:84268000-84269400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr1:84268200-84268800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:84268200-84268800	Enhancers	Fetal Muscle Leg	muscle
19	chr1:84268400-84268800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:84268400-84268800	Enhancers	Right Atrium	heart
21	chr1:84268400-84270400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:84268600-84268800	Enhancers	H1 Cell Line	embryonic stem cell

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