Variant report

Variant	rs2296257
Chromosome Location	chr1:84311412-84311413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11163849	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12134669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12135529	0.83[EUR][1000 genomes]
rs12139301	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12144970	0.84[EUR][1000 genomes]
rs12406928	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1408476	0.82[EUR][1000 genomes]
rs1830825	0.82[EUR][1000 genomes]
rs1830827	0.82[EUR][1000 genomes]
rs4001466	0.83[EUR][1000 genomes]
rs6676587	0.81[EUR][1000 genomes]
rs6680860	0.82[EUR][1000 genomes]
rs6696585	0.83[EUR][1000 genomes]
rs7551130	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523508	chr1:84310193-84314754	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84297600-84313000	Weak transcription	Aorta	Aorta
3	chr1:84310800-84312200	Enhancers	Liver	Liver
4	chr1:84310800-84312200	Enhancers	Fetal Intestine Small	intestine
5	chr1:84310800-84324400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:84311000-84311800	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:84311000-84312200	Enhancers	Adipose Nuclei	Adipose
8	chr1:84311000-84314200	Enhancers	Fetal Intestine Large	intestine
9	chr1:84311200-84312200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:84311200-84315200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:84311200-84315600	Weak transcription	Small Intestine	intestine
12	chr1:84311200-84321200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:84311400-84311800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:84311400-84311800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:84311400-84312000	Enhancers	Brain Germinal Matrix	brain
16	chr1:84311400-84323800	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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