Variant report

Variant	rs11163849
Chromosome Location	chr1:84281197-84281198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12116654	0.89[EUR][1000 genomes]
rs12134669	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12135529	0.91[EUR][1000 genomes]
rs12139301	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12144970	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12406928	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1408476	0.92[EUR][1000 genomes]
rs1830825	0.92[EUR][1000 genomes]
rs1830827	0.92[EUR][1000 genomes]
rs2007415	0.89[EUR][1000 genomes]
rs2296257	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4001466	0.91[EUR][1000 genomes]
rs4140462	0.89[EUR][1000 genomes]
rs4285721	0.83[EUR][1000 genomes]
rs6676587	0.91[EUR][1000 genomes]
rs6680860	0.92[EUR][1000 genomes]
rs6696585	0.91[EUR][1000 genomes]
rs7551130	0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11163849	DDAH1	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84279800-84282800	Enhancers	Liver	Liver
2	chr1:84280000-84281200	Weak transcription	Right Atrium	heart
3	chr1:84280800-84281600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:84280800-84282000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:84281000-84281400	Enhancers	Pancreas	Pancrea
6	chr1:84281000-84281600	Enhancers	Fetal Heart	heart
7	chr1:84281000-84281600	Enhancers	NHDF-Ad	bronchial
8	chr1:84281000-84281800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:84281000-84281800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84281000-84281800	Enhancers	Adipose Nuclei	Adipose
11	chr1:84281000-84281800	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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