Variant report

Variant	rs12406928
Chromosome Location	chr1:84298457-84298458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11163849	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12116654	0.84[EUR][1000 genomes]
rs12134669	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135529	0.88[EUR][1000 genomes]
rs12139301	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12144970	0.89[EUR][1000 genomes]
rs1408476	0.87[EUR][1000 genomes]
rs1830825	0.87[EUR][1000 genomes]
rs1830827	0.87[EUR][1000 genomes]
rs2007415	0.84[EUR][1000 genomes]
rs2296257	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4001466	0.88[EUR][1000 genomes]
rs4140462	0.84[EUR][1000 genomes]
rs6676587	0.86[EUR][1000 genomes]
rs6680860	0.87[EUR][1000 genomes]
rs6696585	0.88[EUR][1000 genomes]
rs7551130	0.85[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84285800-84305000	Weak transcription	Liver	Liver
3	chr1:84294800-84299600	Weak transcription	Fetal Heart	heart
4	chr1:84295400-84309000	Weak transcription	Primary T cells from cord blood	blood
5	chr1:84295400-84310200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:84297600-84313000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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