Variant report

Variant	rs932448
Chromosome Location	chr1:84308491-84308492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12135529	0.88[ASN][1000 genomes]
rs1408477	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4001466	0.86[ASN][1000 genomes]
rs4907041	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4907183	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66660738	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6673159	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680860	0.83[ASN][1000 genomes]
rs6690239	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6696585	0.86[ASN][1000 genomes]
rs6699405	0.89[JPT][hapmap]
rs7552393	0.89[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs932448	LPHN2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84295400-84309000	Weak transcription	Primary T cells from cord blood	blood
3	chr1:84295400-84310200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:84297600-84313000	Weak transcription	Aorta	Aorta
5	chr1:84301800-84310200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:84306000-84310800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:84306000-84311200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:84307600-84310400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:84308000-84310800	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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