Variant report

Variant	rs4912214
Chromosome Location	chr1:57098676-57098677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10888995	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10888996	0.90[ASN][1000 genomes]
rs10888997	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888999	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11206880	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11206883	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12032377	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12073253	0.86[ASN][1000 genomes]
rs2404990	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2746352	0.83[ASN][1000 genomes]
rs2746355	0.84[ASN][1000 genomes]
rs7542282	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7551675	0.95[ASN][1000 genomes]
rs7553623	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57092400-57098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:57098200-57098800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr1:57098200-57099000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:57098200-57099000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:57098200-57099400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:57098400-57099000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:57098400-57103800	Weak transcription	Hela-S3	cervix
8	chr1:57098600-57099600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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